Omega Fatty Acids

"Health Food" companies are always trying to sell us something new.
Instead of eating tasty fish they recommend we consume fish oil wrapped in plastic as a pill. Apparently this is because we are suddenly deficient in "omega-3 fatty acids".
So what are omega-3 fatty acids?
Where do they come from?
Do we really need them?

AUS-e-TUTE Members should log-in to access the new omega fatty acid resources (tutorial, game, test, exam).

If you are not an AUS-e-TUTE Member you can access a free-to-view tutorial at
https://www.ausetute.com.au/omegafat.html

Short Chain Fatty Acids?

I came across this story in the Sydney Morning Herald this morning, "A make-or-break moment for what may be a new molecule". Sounds exciting doesn't it. A hint of uncertainty, is it or isn't it a new molecule? What will it "make or break"?

It appears that Charles Mackay, a Professor of Microbiology at Monash Biomedicine Discovery Institute has, "demonstrated that dietary fibre and its breakdown fermented products, the short chain fatty acids (SCFAs) influence gut homeostasis, the composition of the gut microbiota, immune tolerance, and inflammatory responses."  I must apologize, I've never been particularly interested in biology, so I actually have no idea what any of that means, but from the story in the newspaper it appears that Professor Mackay thinks we should be eating more "short chain fatty acids" as are present in fermented foods such as vinegars and hence vegetables pickled in vinegars, and this will help regulate our blood pressure and immune system, keeping us healthy. Good news for me, I love pickled onions and gherkins, and have been known to indulge in sauerkraut and kimchi.

But what on earth is a "short chain fatty acid"?

Now, a fatty acid is a long chain carboxylic acid.
A carboxylic acid is a molecule with a carboxylic acid functional group (COOH) at the end of a hydrocarbon chain.
For example, formic acid is the carboxylic acid which is present in an ant's sting. It has only one carbon atom in the chain, its formula is HCOOH (CH₂O₂)
Acetic acid is the carboxylic acid that gives vinegar it's tang. It has 2 carbon atoms in its chain,

CH₃-COOH (C₂H₄O₂)

But fatty acids have lots of carbon atoms in the chain, common fatty acids have 12 or 14 or 16, or 18 carbon atoms in the chain. These fatty acids (long chain carboxylic acids) are found naturally in the oils and fats of plants and animals. If the long hydrocarbon chain is saturated (contains only single bonds between the carbon atoms in the chain) it is called a saturated fatty acid. If there is one, or more, double bonds between carbon atoms in the long chain then it is referred to as an unsaturated fatty acid.

So a "short chain fatty acid" would be what? A short long chain carboxylic acid? Sounds like nonsense doesn't it? Maybe it's a medium length chain carboxylic acid?

According to wikipedia (which may or may not be a reliable source of information),  a "short chain fatty acid" is a fatty acid with 2 to 6 carbon atoms. Included in wikipedia's list of "short chain fatty acids" are the two carboxylic acids we used as examples above, formic acid (which has only 1 carbon atom in its chain and hence does not actually fit within wikipedia's own definition and hence my concern about the reliability of the information it provides), and, acetic acid. So, a "short chain fatty acid" is in fact NOT a short chain "fatty acid", it is simply a short chain carboxylic acid!

Is the "molecule" new, as claimed by the headline? Most unlikely because:

• "short chain fatty acids" is just a poor description of a group of molecules sharing a carboxylic acid functional group, not just 1 molecule
• we've known about these short chain carboxylic acids for a very, very long time

References:
http://www.smh.com.au/national/a-make-or-break-moment-for-what-may-be-a-new-miracle-molecule-20180216-p4z0ky.html
https://research.monash.edu/en/persons/charles-mackay 
https://en.wikipedia.org/wiki/Short-chain_fatty_acid 

Suggested Study Questions:

1.  Draw the 2-dimensional structure formula for each of the following carboxylic acids:
   • formic acid
   • acetic acid
   • propanoic acid
   • butanoic acid
   • pentanoic acid
   • hexanoic acid
2. Draw a condensed structural formula for each of the carboxylic acids in question 1.
3. Draw a skeletal structural formula for each of the carboxylic acids in question 1.
4. Give the molecular formula for each of the carboxylic acids in question 1.
5. Give the empirical formula for each of the carboxylic acids in question 1
6. Are the carboxylic acids in question best described as saturated or unsaturated? Explain your answer.
7. On each 2-dimensional structural formula, identify, circle and name the functional group common to all the molecules.
8. Draw at least 2 structural isomers with the molecular formula C₅H₁₀O₂
9. Circle the functional groups in the molecules you draw in question 8. Name these functional groups.
10. Choose 2 of the structural isomers drawn in question 8. Would you expect these 2 molecules to have very similar, or very different, physical and chemical properties. Explain your answer.

Omega-3 Acids Fight Cancer

Scientists at the University of Guelph have found that omega-3s from fish are better at preventing cancer than omega-3s from plants.

"Omega-3s" refer to omega-3 fatty acids which are a type of long-chain, polyunsaturated carboxylic  acid. Long-chain carboxylic acids are referred to as "fatty acids".
The three omega-3 fatty acids studied were: 

• α-linolenic acid (ALA) which is found in plant seeds and oils

• eicosapentaenoic acid (EPA) which is found in fish, algae and phytoplankton

• docosahexaenoic acid (DHA) which is found in fish, algae and phytoplankton

 The skeletal structural formula for α-linolenic acid is shown below:

 The IUPAC name of α-linolenic acid is (9Z,12Z,15Z)-9,12,15-octadecatrienoic acid. 
The carbon atom of the carboxyl functional group (COOH) is labelled as 1, the next carbon atom in the chain is 2, then 3, etc, up until we reach the last carbon in the chain, carbon 18. The parent hydrocarbon for this molecule is therefore octadecane, with a suffix added for the carboxyl functional group, so we have octadecanoic acid. 
Along the way we find 3 (tri) double bonds (en) at carbons numbered 9, 12 and 15, so we modify the name of the carboxylic acid in one of two ways:

• 9,12,15-octadecatrienoic acid

• octadeca-9,12,15-trienoic acid

The "Z" indicates the 3-dimensional geometry,  in this case the "Z" geometry equates to a "cis" geometry.
So why would  (9Z,12Z,15Z)-9,12,15-octadecatrienoic acid be called an omega-3 acid?
There is an alternative naming "system" (not IUPAC)  in which the first carbon atom is not labelled 1, but instead it is called "alpha" (α), and, the carbon atom at the end of the long hydrocarbon chain is called "omega" (ω). Then, the last carbon atom in the chain (omega) is labelled 1, and you start counting back towards the carboxyl functional group. If you do this, you will find that carbon 3 has a double on it, hence, (9Z,12Z,15Z)-9,12,15-octadecatrienoic acid is called an omega-3 fatty acid. The 3 indicates the position of the first double bond from the omega carbon atom.

The skeletal structural formula of eicosapentaenoic acid is shown below:

The IUPAC name for this molecule is (5Z,8Z,11Z,14Z,17Z)-5,8,11,14,17-Icosapentaenoic acid. 
There are 20 carbon atoms in the chain so the parent hydrocarbon chain is icosane, which is modified with a suffix because there is a carboxyl functional group, icosanoic acid.
There are 5 (pent) double bonds (en) located on carbons 5, 8, 11, 14 and 17, so the name of this molecule is either:

• 5,8,11,14,17-icosapentenoic acid

• icosa-5,8,11,14,17-pentenoic acid

Once again, the Zs in the name refer to the geometry (same as a "cis" geometry in this case).
Notice that, in the alternative naming "system" in which the last carbon atom in the chain is labelled "omega" and then you count backwards from this, we see that the first double bond encountered is on carbon 3, so this molecule is also referred to as an omega-3 fatty acid.

The skeletal structural formula below is that of docosahexaenoic acid:

This molecule has the IUPAC name (4Z,7Z,10Z,13Z,16Z,19Z)-4,7,10,13,16,19-Docosahexaenoic acid. 22 carbon atoms in the chain (docosa), 6 (hexa) double bonds on carbons 4, 7, 10, 13, 16, 19 and a carboxyl functional group: 4,7,10,13,16,19-docosahexaenoic acid or docosa-4,7,10,13,16,19-hexenoic acid. Zs indicate geometry (same as "cis" in this case).
Using the alternative numbering system, the first double bond occurs of the third carbon atom from the omega carbon atom (last carbon in the chain) so it is also classified as an omega-3 fatty acid.

While all three of these omega-3 fatty acids were shown to be effective in reducing the size of tumours in mice, however, higher doses of the plant-based α-linolenic acid was required to deliver the same impact as the omega-3 fatty acids found in fish (icosapentaenoic acid and docosahexaenoic acid)



Reference:

Jiajie Liu, Salma A. Abdelmagid, Christopher J. Pinelli, Jennifer M. Monk, Danyelle M. Liddle, Lyn M. Hillyer, Barbora Hucik, Anjali Silva, Sanjeena Subedi, Geoffrey A. Wood, Lindsay E. Robinson, William J. Muller, David W.L. Ma. Marine fish oil is more potent than plant based n-3 polyunsaturated fatty acids in the prevention of mammary tumours. The Journal of Nutritional Biochemistry, 2017; DOI: 10.1016/j.jnutbio.2017.12.011

Further Reading:
Introduction to naming organic molecules: http://www.ausetute.com.au/namctut1.html
Introduction to functional groups: http://www.ausetute.com.au/fungroup.html
Fatty acids: http://www.ausetute.com.au/fattyacid.html 
Structure and properties of carboxylic acids: http://www.ausetute.com.au/carboxyl.html
Molecular formula: http://www.ausetute.com.au/molecularformula.html
2-Dimensional structural formula: http://www.ausetute.com.au/structural2D.html
Condensed structural formula: http://www.ausetute.com.au/condensedsf.html
Skeletal structural formula: http://www.ausetute.com.au/skeletal.html
Cis-trans isomers: http://www.ausetute.com.au/cistranso.html 


Suggested Study Questions:

1. What functional group is common to all fatty acids? 
2. Define the following terms as they are used in chemistry:
   • saturated
   • unsaturated
   • monounsaturated
   • polyunsaturated
3.  Give the molecular formula for each of the three omega-3 acids in the article
4. The structural formula given in the article are referred to as "skeletal". What does this mean in chemistry?
5. Draw a 2-dimensional (full display) structural formula for each of the omega-3 acids in the article.
6. On the structural formula of each of the three omega-3 acids circle the:
   
   • carboxyl functional group in red
   • double bonds in blue
7. What features are common to three omega-3 acids in the article?
8.  In what ways do the the three omega-3 acids in the article differ?
9. You have probable heard about omega-6 acids. How do you think an omega-6 acid will be similar to an omega-3 acid?
10. How will an omega-6 acid be different from an omega-3 acid?
11. What is meant by a cis isomer and a trans isomer?
12. All the omega-3 fatty acids in the article are the cis isomers. Build a model, and draw, a trans isomer of one of the fatty acids.

Betaines

Betaines are found in plants, animals and microorganisms. Rich sources of betaines in the human diet are seafood, spinach and wheat germ or bran. Research is beginning to indicate that betaines are important nutrients for the prevention of chronic disease. Researchers are also interested in incorporating betaines into polymer brushes used for antifouling and lubrication.

Betaines are compounds with a positively charged functional group linked to a negatively charged functional group with an alkyl chain in between. The alkyl chain is often referred to as an alkyl chain spacer.  The general structure of an N-alkyl betaine is shown below:

The first betaine discovered was found in sugar beets in the nineteenth century. This betaine is (trimethylammonio)acetate, also known as trimethylglycine, and its skeletal structure is shown below:

Another example of a betaine is 2-(trimethylammonio)octadecanoate (also known as hexadecylbetaine) with the skeletal structure shown below:

2-(Trimethylammonio)tetradecanoate, or dodecylbutaine or laurylbutaine, is also a butaine and its skeletal structure is shown below:

Betaines are strongly attracted to water molecules because of these two charged functional groups.
The solubility of betaines in water is dependent on the length of the carbon chain, as well as on temperature and pH. 
In acidic solution, betaines acquire a net positive charge and act like a cationic surfactant. In anionic solutions, betaines acquire a net negative charge and act like an anionic surfactant.

Betaines can also be used in polymer brushes which are polymers bound to a surface. Polymer brushes can be used for antifouling and lubrication because the hydration of the ionic groups reduces the ability of other materials to adhere to the surface. 

Researchers at Kyushu University recently investigated a series of alkly chain spacers of different lengths bound to a silicon surface. They found that the polymer brushes swelled in humid air and water. It is believed that this is due to electrostatic repulsion between charged groups, and not dependent on the length of the alkyl chain.
In deionised water, net positive cations and net negative anions are repelled because of the  electrostatic force which causes the chain dimension to expand, whereas they shrink under high ionic strength by a charge screening effect of the bound ions.

Reference:
https://www.sciencedaily.com/releases/2017/08/170821094302.htm

Further Reading
Introduction to Functional Groups
2-Dimensional Structural Formula
Condensed Structural Formula
Molecular Formula
Amino Acids
Surfactants ( as found in synthetic detergents)
Intermolecular Forces and Solubility

Suggested Study Questions

1. Locate and identify each functional group on the skeletal structural formula of
• general formula N-alkyl betaine 
• (trimethylammonio)acetate
• 2-(trimethylammonio)octadecanoate
• 2-(trimethylammonio)tetradecanoate
2. Draw a 2-dimensional structural formula for each of the following molecules:
• (trimethylammonio)acetate
• 2-(trimethylammonio)octadecanoate
• 2-(trimethylammonio)tetradecanoate
3. Write the condensed structural formula for each of the following molecules:
• (trimethylammonio)acetate
• 2-(trimethylammonio)octadecanoate
• 2-(trimethylammonio)tetradecanoate
4. Write the molecular formula for each of the following molecules:
• (trimethylammonio)acetate
• 2-(trimethylammonio)octadecanoate
• 2-(trimethylammonio)tetradecanoate
5. Compare the structure of betaines to that of 2-amino acids. Can N-alkyl betaines be classified as alpha amino acids (2-amino acids) ? Justify your answer.
6. Write chemical equations to describe what happens to an N-alkyl betaine in:
• acidic aqueous solution
• basic aqueous solution
7. Compare the structure of N-alkyl betaines to the surfactants found in synthetic detergents. In what ways are surfactant molecules 
• similar to N-alkyl betaines
• different from N-alkyl betaines
8. Explain how N-alkyl betaines act like 
• a cationic surfactant in acidic aqueous solution
• an anionic surfactant in basic aqueous solution
9. Consider the structure of (trimethylammonio)acetate and 2-(trimethylammonio)octadecanoate. Which molecule do you expect to be more soluble in water? Justify your answer.
10. Consider the structure of (trimethylammonio)acetate and 2-(trimethylammonio)octadecanoate. Which molecule do you expect to be more soluble in paraffin oil? Justify your answer.

Nanoparticles to Remove Coral Bleaching Oxybenzone

Sunblocks contain a number of different compounds including oxybenzone which acts as a UV filter. The skeletal structural formula of oxybenzone is shown below:

Oxybenzone is soluble in water.
Before you go snorkeling in the Great Barrier Reef to be amazed by the beautiful corals, fascinating fish and other exciting wonders, you smother yourself in sunblock. When you step into the water, the oxybenzone starts to dissolve. Unfortunately, oxybenzone contributes to coral bleaching, the killing off of the tiny, colourful zooxanthellae marine algae that live inside corals. The result is that the coral loses its colour and appears white, as if it has been bleached.

Researchers have found a way to soak up the oxybenzone from the seawater using magnetite nanoparticles.

Magnetite, Fe₃O₄ , is a mineral made up of iron(II) and iron(III) oxides and is one of the main iron ores, that is, magnetite is mined in order to produce iron. Magnetite is ferromagnetic, that is, it is attracted to a magnet. It is the most magnetic naturally occurring mineral on Earth. If you could get the oxybenzone in the seawater to attach to magnetite nanoparticles then you could pull the oxybenzone out of the water using a magnet.

First, the researchers coated the magnetite nanoparticles with sodium oleate. The skeletal structural formula of sodium oleate is shown below:

Next, they oxidised the oleate coating to increase the number of hydroxyl (OH) functional groups:

Since oxybenzone can interact with other molecules via hydrogen bonds, magnetite nanoparticles  covered in a coating rich with hydroxyl functional groups increases the interactions between oxybenzone and the nanoparticles. Once the oxybenzone has hydrogen bonded to the nanoparticle coating, a magnet can be used to extract the particles from water.

Does it work?
One brave researcher applied sunblock, stepped into the ocean, waited 10 minutes, then collected a sample of the surrounding seawater. Back at the lab, chromatography was used to determine the concentration of oxybenzone in the water, 1.3 ppm. This is a disturbing result since it is known that the concentration needed to bleach coral is measured in parts per billion.
Next, the researchers prepared seawater samples. Some had no magnetite nanoparticles added, others had the nanoparticles added. Then they added 30 ppm oxybenzone to  all the samples. The concentration of oxybenzone in the samples with no nanoparticles did not change in an hour. In the samples that contained the nanoparticles, 95% of the  oxybenzone  was removed within the hour.

Reference
American Chemical Society. "Sopping up sunblock from oceans to save coral reefs." ScienceDaily. ScienceDaily, 21 August 2017.

Further Reading
Solutions Concepts
Water as a Solvent
Transition Metals (magnetism)
Fatty Acids
Carboxylic Acids
Nanoparticles and Nanotechnology
Parts per Million (ppm)
Chromatography
Experimental Design
Variables
2-Dimensional Structural Formula
Skeletal Structural Formula
Molecular Formula

Suggested Study Questions

1. For a molecule of oxybenzone:
• draw the 2-dimensional structural formula
• give the molecular formula
2. On the 2-dimensional structural formula of oxybenzone identify and name each functional group present.
3. Use diagrams to explain why oxybenzone is soluble in water.
4. Draw the 2-dimensional structural formula for oleic acid.
5. On your structural formula of oleic acid, identify and name the functional group(s).
6. Suggest a method by which you could change oleic acid into sodium oleate in the laboratory.
7. Suggest a method by which you could oxidise sodium oleate in the laboratory.
8. Explain the term "nanoparticle".
9. Why do you think the researchers chose nanoparticles of magnetite rather than bulk magnetite for this research?
10. Consider the description of the experiment used to determine the effectiveness of the magnetite nanoparticles in removing oxybenzone from seawater:
• What was the hypothesis being tested?
• What was the aim of the experiment?
• What variables need to be considered in this experiment?
• What is the independent variable in the experiment?
• What is the dependent variable in the experiment?
• Which variables are constant variables in the experiment?
• Why did the experimenters add nanoparticles to some samples but not to others?
• Write out a suitable method for this experiment.

Fatty Acids

Do you want to answer any of the questions listed below:

• What is a fatty acid?
• What are the structures and formulae of common fatty acids?
• What is a saturated fatty acid?
• What is an unsaturated fatty acid?
• What is a monounsaturated fatty acid?
• What is a polyunsaturated fatty acid?
• What determines the melting point and solubility of a fatty acid?
• What is an essential fatty acid?
• What is an omega-3 fatty acid?
• What is an omega-6 fatty acid?

AUS-e-TUTE has new resources to help you answer these questions!
AUS-e-TUTE Members should log-in to use the new tutorial, game, test and exam.

If you are not an AUS-e-TUTE Member, a "free-to-view" Fatty Acids tutorial is currently available at http://www.ausetute.com.au/fattyacid.html for evaluation purposes.

Lipstick Evidence

Lipstick is sticky stuff!
Kissing someone on the cheek with your lusciously lipsticked lips will invariably leave a colourful impression. And, after you've had your sip of coffee your "lips" are left behind in vivid colour on the cup. Lipstick can even end up on tissues after  a momentary touch as you blow nose, or wipe tears from your eyes. And we've all seen movies in which a wife discovers lipstick (not her own) on her husband's collar. Needless to say then that lipstick can be found at a crime scene and is considered to be an example of "trace evidence".
Researchers at  Western Illinois University have been investigating better ways to lift and analyse this lipstick evidence.
In general, lipstick is composed of

•     65% castor oil
•     15% beeswax
•     10% other waxes
•     5% lanolin (also known as wool wax or wool grease)
•     5% dyes, pigments and perfume

In other words, most of the mass of a lipstick is made up of lipids (fats, oils and waxes).
To lift the lipstick from the material, the researchers developed a two part process:

1.   Add an organic solvent to remove most of the oils and waxes.
2.   Add a basic organic solvent to extract the remaining residue.

The components of the lipstick are now present in solution.
In order to determine the chemical composition of the solutions, they will need to undergo separation and analysis. Three common methods of doing this are:

• thin layer chromatoagraphy (TLC)
• gas chromatography (GC)
• high performance liquid chromatography (HPLC)

Different brands of lipsticks have different chemical compositions so they produce different chromatographs.
Using known brands and colours of lipsticks, the researchers can produce a database of chromatographs. When lipstick evidence is found at the scene of a crime, forensic scientists can produce a chromatogram of it and compare this with the database of known brands and colours in order to find a match. In this way forensic scientists can determine the brand and colour of the lipstick. Law enforcement officials could then investigate whether a suspect uses that particular lipstick.
The researchers are still performing analyses of lipsticks, but at this stage they have reported that the best results are achieved with gas chromatography (GC).

Reference:
American Chemical Society. "Tying lipstick smears from crime scenes to specific brands." ScienceDaily. ScienceDaily, 14 March 2016.

Further Reading:
Percentage composition 
w/w % concentration
Parts per million (ppm) concentration
Lipids (oils, fats and waxes) 
Properties of Carboxylic Acids 
Preparation and Naming of Simple Esters


Suggested Study Questions:

1. A tube of lipstick contains 4.0 grams of lipstick. Calculate the mass of each of the following components of the lipstick:
   
   • castor oil
   • beeswax
   • lanolin
2.  The castor oil used to make the 4.0 grams of lipstick is itself made up of a number of fatty acids notably about 90% ricinoleic acid, 4% oleic acid and 3% linoleic acid. Calculate the mass of each of these fatty acids present in the lipstick.
3. Why do you think the concentrations of chemical compounds found in lipstick are given as % w/w (percentage by weight or percentage by mass) rather than in units of mol L^-1 or ppm?
4.  What is meant by the term "fatty acid" in chemistry?
5.  Draw and name the functional group that is present in both carboxylic acids and fatty acids.
6.  Acetic acid (ethanoic acid) is miscible (soluble in all proportions) in water,  whereas the solubility of pentanoic acid is 3.4 g mL^-1, and of hexanoic acid is 1.0 g mL^-1. Would you expect oleic acid (C₁₇H₃₄O₂) to be soluble in water? Explain your answer.
7.  What is meant by the term "triglyceride" in chemistry?
8.  Draw the functional group that is common to both triglycerides and esters.
9.  Esters are immiscible in water so an organic solvent is used to extract the triglycerides from the lipstick marks. Imagine you have been given samples of cyclohexane, ethanol, and acetone. Which of these do you think would be the best solvent to use on the lipstick mark, and explain your answer.
10.  Design an experiment that you could perform to test your hypothesis in question 9 above regarding which of the solvents would be best to use on the lipstick mark.

Trans Fats

Some fats, such as polyunsaturated fats, are thought to be good for us.

They lower the "bad" type of cholesterol which has been linked to heart disease.

Other fats, such as saturated fats and trans fats, are considered to be bad for us because they increase this "bad" type of cholesterol.

Since the beginning of the 21st century, health authorities all over the world have been calling for the elimination of trans fats from commercially produced food products.

But what is a trans fat and where does it come from?

Go to the June 2014 issue of AUS-e-NEWS for the chemistry of Trans Fats.

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